Hi all, I'm a new user of modeller, I want to know how to conserve residue numbering between my target sequence and the MODEL? I will try to build a final Model using two parts of my protein sequence but I want to conserve the numbering. One of my alignment files looks like this: >P1;2hydA structureX:2hydA:1:A:578::::: ----------------------------------------------MIKRYLQFVKPYKY RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHA----------------LTTDEKVHH LTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQ VGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYIL TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR ALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRR LVASFTTLTQSFASMDRVFQLIDEDYDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDN-EA PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR NQIGLVQQDNILFSDTVKENILLG-RPTATDEE-VVEAAKMANAHDFIMNLPQGYDTEVG ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV AHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL----* >P1;1pgp sequence:1pgp:43: :630::::: --------------------------------------------SNWLDKLYMVVGTLAA IIHGAGLPLMMLVFGEMTDIFANAGNLEDLMSNITNRSDINDT---GFFMNLEEDMTR-- ----YAYYYSGIGAGVLVAAYIQVSFWCLAAGRQIHKIRKQFFHAIMRQEIGWFD--VHD VGELNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPVLGL SAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRI GIKKAITANISIGAAFLLIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQ ASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEV KILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLR EIIGVVSQEPVLFATTIAENIRYGREN--VTMDEIEKAVKEANAYDFIMKLPHKFDTLVG ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVI AHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQT-----*
Regards, A
Anis PhD Student iBiTec-S/SB2SM Laboratoire Stress oxydant et Détoxication CEA-SACLAY, 91191 Gif-sur-Yvette cedex e-mail: anis.bessadok@cea.fr Tel (33)1-69084432, Fax (33)1-69088717