------ Forwarded Message
From: Denis Volkov D.Volkov@artcustoms.ru X-Mailer: The Bat! (v1.52f) Reply-To: Denis Volkov D.Volkov@artcustoms.ru X-Priority: 3 (Normal) Message-ID: 43123585810.20030902125313@artcustoms.ru To: modeller modeller_usage@salilab.org Subject: model_refinment
Hello everyone, I successfully used Modeller to model unknown protein. Now I'd like to sent my model to Protein Data Bank. So i checked my structure using Procheck and find some problems, namely some bad contacts,etc. In order to clean a structure i used Charmm program for energy minimization. But after it i obtain structure with bad angles and bond lengths. Can anybody know how to clean a structure well for PDBank and what programs should be use for it. Thanks in advance Denis Volkov
Enzyme Laboratory,IBCH RAS