Re: [modeller_usage] modeling homodimer with hetero atoms

On 5/18/12 9:28 AM, NUTAN CHAUHAN wrote: > Is there any way to assign the residue numbers starting from 1 to each > of the chain in the model?

Sure, just call rename_segments() from within automodel's special_patches() method. See http://salilab.org/modeller/9.10/manual/node28.html

Ben Webb, Modeller Caretaker