On Mon, May 03, 2004 at 04:18:52PM +0100, rathan kar wrote: > this time iam getting a different error > > and it says > > # Code #_Res #_Segm PDB_code Name > ------------------------------------------------------------------------------- > 1 1hm9 182 1 1hm9 glmu > 2 query 165 1 query unknown > TOP_________> 121 107 CHECK_ALIGNMENT > > check_a_343_> >> BEGINNING OF COMMAND > pdbnam__217W> Filename for PDB code not found: 1hm9 > Directories: c:/mod6v2/bin/1hm9.atm > Extensions : :.atm:.pdb:.ent:.crd
Given that your alignment specifies 'structureX' for 1hm9, you need to give Modeller a PDB file with the structure in. This needs to be in a file called something like 1hm9.pdb or pdb1hm9.ent.
Ben Webb, Modeller Caretaker