After executing "sequence_search" for two hours  does not deliver  result:
 
The file .top used is the following one:
--------------------------------------------------------------------------------------------------------------
INCLUDE
 
SET OUTPUT_CONTROL = 1 1 1 1 1
SET SEARCH_RANDOMIZATIONS = 3
SET FILE = 'TvLDH.ali'
SEQUENCE_SEARCH ALIGN_CODES = 'TvLDH', DATA_FILE  = ON
-----------------------------------------------------------------------------------------------------------------
 
The used file of sequence is the following one:
 
>P1;TvLDH
sequence:TvLDH:::::::0.00: 0.00
MSEAAHVLITGAAGQIGYILSHWIASGELYG-DRQVYLHLLDIPPAMNRLTALTMELEDCAFPHLAGFVATTDPK
AAFKDIDCAFLVASMPLKPGQVRADLISSNSVIFKNTGEYLSKWAKPSVKVLVIGNPDNTNCEIAMLHAKNLKPE
NFSSLSMLDQNRAYYEVASKLGVDVKDVHDIIVWGNHGESMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFKK
IGHRAWDILEHRGFTSAASPTKAAIQHMKAWLFGTAPGEVLSMGIPVPEGNPYGIKPGVVFSFPCNVDKEGKIHV
VEGFKVNDWLREKLDFTEKDLFHEKEIALNHLAQGG*
 
--------------------------------------------

The file .log obtained is :
 
----------------------------------------------------------------------------------------------------------------
MODELLER 6v2, 17 Feb 2002
 
     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
 
                                                                
                     Copyright(c) 1989-2002 Andrej Sali         
                            All Rights Reserved                 
                                                                
                            Written by A. Sali                  
          with help from A. Fiser, R. Sanchez, M.A. Marti-Renom,
                   B. Jerkovic, A. Badretdinov, F. Melo,        
                       J.P. Overington & E. Feyfant             
                   Rockefeller University, New York, USA        
                     Harvard University, Cambridge, USA         
                 Imperial Cancer Research Fund, London, UK      
             Birkbeck College, University of London, London, UK 
 

Kind, OS, HostName, Kernel, Processor: 4, Linux bioinf4 2.4.4-4GB i686
Date and time of compilation         : 05/24/2002 09:27:23
Job starting time (YY/MM/DD HH:MM:SS): 2002/09/23  15:16:01.528
 
TOP_________>   105  705 SET SEARCH_RANDOMIZATIONS = 3
 
TOP_________>   106  706 SET FILE = 'TvLDH.ali'
 
TOP_________>   107  707 SEQUENCE_SEARCH ALIGN_CODES = 'TvLDH', DATA_FILE  = ON
 
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
 
Dynamically allocated memory at         amaxchn [B,kB,MB]:      2306323    2252.269     2.199
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL6v2}/modlib//CHAINS_all.seq
 
Dynamically allocated memory at         amresdb [B,kB,MB]:      5689471    5556.124     5.426
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL6v2}/modlib//CHAINS_all.seq
 
Dynamically allocated memory at         amaxseq [B,kB,MB]:      5877209    5739.462     5.605
 
Dynamically allocated memory at         amaxbnd [B,kB,MB]:    110299725  107714.600   105.190
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL6v2}/modlib//as1.sim.mat
rdrrwgh_268_> Number of residue types:       20
openf5__224_> Open       11  OLD  SEQUENTIAL  TvLDH.ali
 
---------------------------------------------------------------------------------------------------------------------------------------------------------------
 
 
passed the 2 hours it orders the following message:
 
/usr/local/modeller6v2/bin/mod6v2 : line38 : 2030  terminated         $NICE ${EXECUTABLE}  $STEERF  >$LOGF
 
 
WHAT IS A PROBLEM???
That can do?