Hi,
I'm new in Modeller (9v4) and I haven't been able to find an
answer to the following question anywhere I've looked:

Is there a way to keep the original target's residue numbering in
the final model instead of having them sequentially numbered
starting at 1?

As an example, this is my target's sequence (NOTE: "-" are not
gaps, are missing/unknown residues):
>P1;1s58
SEQUENCE:1s58.ali : 19 :A: 554 :A:::0.00:0.00
------------------NPVKSMWSEGATFSANSVTCTFSRQFLIPYDP
EHHYKVFSPAASSCHNASGKEAKVCTITPIMGYSTPWRYLDFNALNLFFS
PLEFQHLIENYGSIAPDALTVTISEIAVKDVTDKTGGGVQVTDSATGRLC
MLVDHEYKYPYVLGQGQDTLAPELPIWVYFPPQYAYLTVGDVNTQGISGD
SKKLASEESAFYVLEHSSFQLLGTGGTATMSYKFPPVPPENLEGCSQHFY
EMYNPLYGSRLGVPDTLGGDPKFRSLTHEDHAIQPQNFMPGPLVNSVSTK
-------------TGLSTGTSQNTRISLRPGPVSQPYHHWDTDKYVTGIN
AISHGQTTYGNAEDKEYQQGVGRFPNEKEQLKQLQGLNMHTYFPNKGTQQ
YTDQIERPLMVGSVWNRRALHYESQLWSKIPNLDDSFKTQFAALGGWGLH
QPPPQIFLKILPQSGPIGGIKSMGITTLVQYAVGIMTVTMTFKLGPRKAT
GRWNPQPGVYPPHAAGHLPYVLYDPTATDAKQHHRHGYEKPEELWTAKSR
VHPL
*

The final model's PDB starts with residue number 1 and ends
with residue number 523 (number of residues in the sequence).
What I would like to get is a model's PDB starting at residue
19, jumping from residue 300 to residue 314 and so, ending at
residue 554.

Thanks in advance for any pointers!

--
0 | Mauricio Carrillo Tripp, PhD
/ | Department of Molecular Biology, TPC6
0 | The Scripps Research Institute
\ | 10550 North Torrey Pines Road
0 | La Jolla, California 92037
/ | trippm@scripps.edu
0 | http://www.scripps.edu/~trippm

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