Hi Arun how many residues in each chain total 
and how many residues are missing in each chain 
that need to be modeled? Best, Joel 🚀

On Thursday, August 31, 2023, Ajasja Ljubetič via modeller_usage <modeller_usage@salilab.org> wrote:
I think the only trick is not forgetting the chain break in the ali file:


PS: It's a very broad question, so I can only give a broad reply.

On Thu, 31 Aug 2023 at 09:12, Arun Dhanasekaran via modeller_usage <modeller_usage@salilab.org> wrote:
i tried a build a homology model of a heterodimer protein,since it contains missing residue i have to model that. But i am only familiar with single chain homology modelling and fro multi chain i am getting many errors like in greeting ali flie. and from tutorial also i am not getting everything clearly. can i get a detailed explantiojn on multi chain modelling

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