Dear friends,
Thank you very much for your replies.First i will tell my problem clearly.
I am having a protein of 274 amino acids.When i searched for the template for this protein it picked up the template which is of homodimer in nature. i.e, it is having
aaaaaaaaaaaaaa/aaaaaaaaaaaaaaaaa(two chains).My protein is also belong to the same family of template.In this family homodimer is of active form.
My protein matching with only to the first chain.
If i go ahead with this alignment i will get my peotein in monomeric form.
My question is
1.Whether i can go ahead and get my protein in monomeric form and after that i can do any trick to convert it into homodimer form-->how to do this.
2.else in the alignment itself can i do any trick so that i can get homodimer model of my protein--->how to do this. or in the script file.
If you tell me it will be of very helpful to me.Expecting reply from you.
from, Senthil kumar.R