Try Salign followed by muscle

From: modeller_usage-bounces@salilab.org [mailto:modeller_usage-bounces@salilab.org] On Behalf Of Ramin Ekhteiari
Sent: Friday, 5 July 2013 3:26 a.m.
To: modeller_usage@salilab.org
Subject: [modeller_usage] multiple templates alignment with target

Hi,

Would you please let me know, by which python script can I align multiple templates with my target?

Cheers,