#!/usr/bin/env python	
from modeller import *
from modeller.automodel import *

log.verbose()
env = environ()
env.io.atom_files_directory = ['.','../atom_files']
a = automodel(env, alnfile = 'temp-tar.ali', knowns = 'temp', sequence = 'targ')
a.starting_model= 1
a.ending_model = 1
a.make()