If I disable the default N and C-term patched, must I manually apply them?
Hi all,
I hope to model a protein which is only a part of a big one (i.e. not up to its real N or C-terminal). So I turn off the default N and C patches with "patch_default=false". In this case, must I manually apply neutral patches, like ACE and CT3 to my model? I mean, can Modeller work wothout any N and C-term patches? I asked this because my next step is docking, which did not require any preexisting terminal patches. Thank you.
Best wishes, Stanley
On 03/18/2010 07:59 PM, wayj86 wayj86 wrote: > I hope to model a protein which is only a part of a big one (i.e. not up > to its real N or C-terminal). So I turn off the default N and C patches > with "patch_default=false". In this case, must I manually apply neutral > patches, like ACE and CT3 to my model? I mean, can Modeller work wothout > any N and C-term patches? I asked this because my next step is docking, > which did not require any preexisting terminal patches. Thank you.
You can build a model without any terminal patches if you want - I doubt it will affect the model at all.
Ben Webb, Modeller Caretaker
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wayj86 wayj86