Dear: I try to make mutation model by this scrips: http://salilab.org/modeller/wiki/Mutate%20model When I typed command in terminal: py2 1-nh-active.pdb 97 VAL A>mute-native.log It is said: ATOM 1 CB THR A 1 57.352 108.506 46.727 1.00 21.29 A ^ SyntaxError: invalid syntax I don't know where is the mistake. Thank you very much.
On 03/23/2010 01:15 AM, leuven wrote: > I try to make mutation model by this scrips: > http://salilab.org/modeller/wiki/Mutate%20model > When I typed command in terminal: py2 1-nh-active.pdb 97 VAL > A>mute-native.log > It is said: > * ATOM 1 CB THR A 1 57.352 108.506 46.727 1.00 21.29 A > ^ > SyntaxError: invalid syntax* > I don't know where is the mistake.
You're telling Python to "run" your PDB file, and it's complaining because (obviously) a PDB file is not a valid Python script. If you look closely at the wiki page you referenced above, you'll notice you have to put the name of the Python script before the name of the PDB file.
Ben Webb, Modeller Caretaker
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