Well, I'm not the most expert but if residues are missing they probably belong to a loop thus they probably don't have a fixed structure...

Bye Marco

--- Mar 18/5/10, Nicee nicee.srivastava@imtech.res.in ha scritto:

> Da: Nicee nicee.srivastava@imtech.res.in > Oggetto: [modeller_usage] [Fwd: to model only specific region] > A: modeller_usage@salilab.org > Data: Martedì 18 maggio 2010, 12:39 > ------------------------------- > Original Message ------------------------------- > Subject: to model only specific region > From:    "Nicee" nicee.srivastava@imtech.res.in > Date:    Tue, May 18, 2010 3:32 pm > To:      modeller_usage@salilab.org > -------------------------------------------------------------------------------- > > Hello all, > > I have a pdb file(pdb1.pdb) which is having some missing > residues like from 89 > to 96 and 137 to 141,etc. I wish to model only this missing > region such that > rest of the structure remains the same as in the initial > pdb(pdb1.pdb). I have > searched a template(pdb2.pdb) having 64% identity with > sequence(seq1)of pdb1. Is > it possible to model the missing residues using pdb2 as > template but the > remaining portion of pdb1 remains the same. Kindly > help.Eagerly witing for > response. > Thanking you. > > With regards, > Nicee. > > > > > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage >