------------------------------- Original Message ------------------------------- Subject: to model only specific region From: "Nicee" nicee.srivastava@imtech.res.in Date: Tue, May 18, 2010 3:32 pm To: modeller_usage@salilab.org --------------------------------------------------------------------------------
Hello all,
I have a pdb file(pdb1.pdb) which is having some missing residues like from 89 to 96 and 137 to 141,etc. I wish to model only this missing region such that rest of the structure remains the same as in the initial pdb(pdb1.pdb). I have searched a template(pdb2.pdb) having 64% identity with sequence(seq1)of pdb1. Is it possible to model the missing residues using pdb2 as template but the remaining portion of pdb1 remains the same. Kindly help.Eagerly witing for response. Thanking you.
With regards, Nicee.
Well, I'm not the most expert but if residues are missing they probably belong to a loop thus they probably don't have a fixed structure...
Bye Marco
--- Mar 18/5/10, Nicee nicee.srivastava@imtech.res.in ha scritto:
> Da: Nicee nicee.srivastava@imtech.res.in > Oggetto: [modeller_usage] [Fwd: to model only specific region] > A: modeller_usage@salilab.org > Data: Martedì 18 maggio 2010, 12:39 > ------------------------------- > Original Message ------------------------------- > Subject: to model only specific region > From: "Nicee" nicee.srivastava@imtech.res.in > Date: Tue, May 18, 2010 3:32 pm > To: modeller_usage@salilab.org > -------------------------------------------------------------------------------- > > Hello all, > > I have a pdb file(pdb1.pdb) which is having some missing > residues like from 89 > to 96 and 137 to 141,etc. I wish to model only this missing > region such that > rest of the structure remains the same as in the initial > pdb(pdb1.pdb). I have > searched a template(pdb2.pdb) having 64% identity with > sequence(seq1)of pdb1. Is > it possible to model the missing residues using pdb2 as > template but the > remaining portion of pdb1 remains the same. Kindly > help.Eagerly witing for > response. > Thanking you. > > With regards, > Nicee. > > > > > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage >
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Marco -
Nicee