hi all, I have modelled a protein using modeller & opted for 5 structures. but of those how do i identify the better one.
pls help.
Regards smitha
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Hi Smitha, the linux/UNIX "grep" command is quite helpful to extraxt the scores of the modeller scoring function, try sth like
grep "OBJ" *.B*
in the directory where you store your modeller results. This lists you the score for each model, lower numbers are better, but there are obviously other methods to rank your models and ranking models of similar quality is not a trivial task.
Cheers, r
======================================= Dr. Ralf Schmid ICAPB School of Biological Sciences The University of Edinburgh King's Buildings Ashworth Building Edinburgh EH9 3JW
On Fri, 24 Feb 2006, smitha vishwas wrote:
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smitha vishwas