Hi I was wondering if it was possible, given two protein sequences or structures, to show possible docking interactions between the two proteins? And if so, how this is done?? Thanks for your time, Ryan
rgerber2@bigred.unl.edu wrote: > I was wondering if it was possible, given two protein sequences or > structures, to show possible docking interactions between the two > proteins? And if so, how this is done??
No - Modeller itself does not do any kind of protein-protein docking.
Ben Webb, Modeller Caretaker
It appears to me that the question was general even though it was mailed to Modeller-specific list. So no, Modeller can't do protein docking, but yes, protein-protein docking can be done. See links below for more info:
http://en.wikipedia.org/wiki/Protein-protein_docking http://zlab.bu.edu/zdock/dockingsites.shtml
My general advice: whenever in doubt, go to Wikipedia and type few keywords - it comes up with something relevant more often than not.
Cheers,
Mensur
At 10:35 AM 9/4/2007, Modeller Caretaker wrote: >rgerber2@bigred.unl.edu wrote: > > I was wondering if it was possible, given two protein sequences or > > structures, to show possible docking interactions between the two > > proteins? And if so, how this is done?? > >No - Modeller itself does not do any kind of protein-protein docking. > > Ben Webb, Modeller Caretaker
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