Hi,
is it possible with modeller to read a particular model from a multi-model PDB file? Or to loop over all models in such a file?
Thanks, Thomas
Hi Thomas,
I don't know about Modeller has it. However, I have been using PDB module from BioPython project [1].
I hope it can help you.
[1] http://biopython.org/wiki/Main_Page
-- Rodrigo Antonio Faccioli Ph.D Student in Electrical Engineering University of Sao Paulo - USP Engineering School of Sao Carlos - EESC Department of Electrical Engineering - SEL Intelligent System in Structure Bioinformatics http://laips.sel.eesc.usp.br Phone: 55 (16) 3373-9366 Ext 229 Curriculum Lattes - http://lattes.cnpq.br/1025157978990218 Public Profile - http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5
On Mon, May 23, 2011 at 6:36 AM, Thomas Holder < thomas.holder@tuebingen.mpg.de> wrote:
> Hi, > > is it possible with modeller to read a particular model from a > multi-model PDB file? Or to loop over all models in such a file? > > Thanks, > Thomas > > -- > Thomas Holder > MPI for Developmental Biology > Spemannstr. 35 > D-72076 Tübingen > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage >
On 5/23/11 2:36 AM, Thomas Holder wrote: > is it possible with modeller to read a particular model from a > multi-model PDB file? Or to loop over all models in such a file?
Sorry, no - Modeller only reads the first model from such a file, terminating at the first ENDMDL record it encounters.
Ben Webb, Modeller Caretaker
participants (3)
-
Modeller Caretaker -
Rodrigo Faccioli -
Thomas Holder