Hi,
I wondered if somebody could help me. Is it at all possible to cluster existing pdb files ? If so can you tell me how to arrange the input arguments I tried using
a=automodel env, alnfile = '', knowns = ('pdb1', 'pdb2'... with cluster(cluster_cut).
Any help/example scripts would be very much appreciated
Thanks
Miriam Leach
Miriam Leach wrote: > I wondered if somebody could help me. > Is it at all possible to cluster existing pdb files ? If so can you tell me how > to arrange the input arguments I tried using > > a=automodel env, alnfile = '', > knowns = ('pdb1', 'pdb2'... > with cluster(cluster_cut).
automodel.cluster() will make a representative of all the models built from one automodel run, by clustering. You can't use it to cluster arbitrary PDB files.
> Any help/example scripts would be very much appreciated
See http://salilab.org/modeller/wiki/Cluster_PDBs
Ben Webb, Modeller Caretaker
-
Miriam Leach -
Modeller Caretaker