Protein specified in ALIGN_CODES<i> was not found in the alignment file; ALIGN_CODES< 1> = 1N11
Hello everybody ! I am new to modeller, so please excuse me if my question seems trivial. I have a problem building a model from multiple templates. When i try to run build model script I get an error:
"Protein specified in ALIGN_CODES<i> was not found in the alignment file; ALIGN_CODES< 1> = 1N11"
I followed all the previous steps from advanced modeling tutorial and all of them worked fine. Now I am stuck, and all solutions I`ve tried dont work. I attatch my script and alignment file.
Thank you for your help in advance !
On Wed, 2013-10-30 17:04 EDT, listek_wfrp@interia.pl wrote:
> Hello everybody ! > I am new to modeller, so please excuse me if my question seems trivial. > I have a problem building a model from multiple templates. > When i try to run build model script I get an error: > > "Protein specified in ALIGN_CODES<i> was not found in the alignment file; > ALIGN_CODES< 1> = 1N11" > > I followed all the previous steps from advanced modeling tutorial and all > of them worked fine. Now I am stuck, and all solutions I`ve tried dont > work. I attatch my script and alignment file. > > Thank you for your help in advance !
Your list of known structures in your scr4.py file
knowns=('1N11','2YVI','3UD1'), sequence='ANK1')
does not match the entries in your alignment file: >P1;1N11A >P1;2YVIA >P1;3UD1A >P1;ANK1
You should change the scr4.py file to have
knowns=('1N11A','2YVIA','3UD1A')
or change the alignment file to remove the "A" after each PDB code.
Cheers, Rob
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Robert Campbell