Hi: My initial model is one chain, I use model_ini.py scripts to build model, and edit my alignment file to add a starting residue number, such as: sequence:bhro:1::348:::::0.00:0.00 it also appears errors: rdpdb___303E> No atoms were read from the specified input PDB file, since the starting residue number and/or chain id in MODEL_SEGMENT (or the alignment file header) was not found; requested starting position: residue number " ", chain " " now, how does MODELLER solve it? thank you!
jinlian05@lzu.cn wrote: > My initial model is one chain, I use model_ini.py scripts to build model, and > edit my alignment file to add a starting residue number, such as: > sequence:bhro:1::348:::::0.00:0.00 > it also appears errors: > rdpdb___303E> No atoms were read from the specified input PDB file, since the > starting residue number and/or chain id in MODEL_SEGMENT (or > the alignment file header) was not found; > requested starting position: residue number " ", chain " "
Well, that's the same error, so you should carefully check to make sure you ran everything correctly. Check also the initial model example in examples/automodel/ to make sure it works for you.
Ben Webb, Modeller Caretaker
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jinlian05＠lzu.cn -
Modeller Caretaker