mzugravu@buffalo.edu wrote: > I'm trying to do fully automated alignment and modeling on a target > sequence having a template sequence. Could you please tell me where I > can create .py (python) files and .erg files like the ones used in > the online tutorial page Fully automated alignment and modeling? > Thank you very much.

You have to write the Python files yourself; there are lots of examples in the manual and tutorial. I don't know what the ".erg" file is you're referring to though. The only other file at http://salilab.org/modeller/9v6/manual/node30.html (I think that's the page you're talking about) is a PIR alignment file, which is probably easiest to create by hand.

Ben Webb, Modeller Caretaker