I'm trying to use the parallel job support built into modeller. I've gotten the jobs to work with "local_slave" workers but when I try to use ssh_slave workers I get an OSError
"OSError [Errno 2] No such file or directory: '/opt/apps/Protein-Threading' from <ssh_clave on iblade003".
I know that ssh_slaves require a shared memory space and I know that everything in properly mounted ... running: ssh iblade003 'ls /opt/apps/Protein-Threading' return the proper results.
Any suggestions? Will
On 3/11/10 10:18 AM, Will Dampier wrote: > I'm trying to use the parallel job support built into modeller. I've > gotten the jobs to work with "local_slave" workers but when I try to use > ssh_slave workers I get an OSError > > "OSError [Errno 2] No such file or directory: > '/opt/apps/Protein-Threading' from <ssh_clave on iblade003". > > I know that ssh_slaves require a shared memory space and I know that > everything in properly mounted ... running: ssh iblade003 'ls > /opt/apps/Protein-Threading' return the proper results.
Hmm, that is odd, because the ssh_slave class doesn't do anything unusual - it just runs "ssh iblade003" and fires up a copy of Python at the other end. Usually I would be tempted to suspect autofs (if you auto-mount those partitions; sometimes autofs can be a little slow and not mount them in time) or a permissions/environment issue.
Ben Webb, Modeller Caretaker
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Modeller Caretaker
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Will Dampier