Regarding > Compare.py < execution
ello Modeller
Good Day!!!!!!!!!
I had installed modeller software in my computer. I was practising the examples on basic modeling with my file name Target.ali, I am comfortable till executing the command.
$mod8v2 Target.py
Execution was success and I got the information for Target.log and Target.prf as described in the tutorial.
But to the next step when i ran the command for comparision
$mod8v2 Targetcompare.py
i got these errors!!!!!!!!!!!!
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[robert@cmm0 basic-example]$ mod8v2 Targetcompare.py Traceback (most recent call last): File "Targetcompare.py", line 6, in ? aln.malign3d() File "/usr/lib/modeller8v2/modlib/modeller/alignment.py", line 210, in malign3d io=io.modpt, libs=libs.modpt, **vars) File "/usr/lib/modeller8v2/modlib/modeller/util/top.py", line 93, in malign3d return _modeller.malign3d(aln, io, libs, *args) _modeller.error: malign3_682E> Structural information is not available for all sequences in the alignment. Aborting.[robert@cmm0 basic-example]$
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Could you please help me in getting rid of this error. I once again thank you for your kind service.
With Regards Robert Selwyne.
Robert Selwyne wrote: > But to the next step when i ran the command for comparision > > $mod8v2 Targetcompare.py > > i got these errors!!!!!!!!!!!! > > ============================================================================= > > [robert@cmm0 basic-example]$ mod8v2 Targetcompare.py > Traceback (most recent call last): > File "Targetcompare.py", line 6, in ? > aln.malign3d() > File "/usr/lib/modeller8v2/modlib/modeller/alignment.py", line 210, in > malign3d > io=io.modpt, libs=libs.modpt, **vars) > File "/usr/lib/modeller8v2/modlib/modeller/util/top.py", line 93, in > malign3d > return _modeller.malign3d(aln, io, libs, *args) > _modeller.error: malign3_682E> Structural information is not available for > all sequences in the alignment. Aborting.[robert@cmm0 basic-example]$ > > ============================================================================
You should check the Targetcompare.log file. Most likely you don't have the necessary PDB files available to provide structural information for all sequences in your alignment, and these will be listed in the .log file.
Ben Webb, Modeller Caretaker
participants (2)
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Modeller Caretaker
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Robert Selwyne