Modeling a missing loop without any template strand
20 Sep
2012
20 Sep
'12
12:19 a.m.
Hi everyone,
I am quite new to modeller (My first time posting). I have a pdb file in which a loop (11 residues long) is missing. I DO NOT have a template strand which contains these missing residues. Can I use modeller to build these for me from scratch?
Thank you
Sajeewa Dewage
20 Sep
20 Sep
5:41 a.m.
On 9/20/12 3:19 AM, Sajeewa Pemasinghe wrote: > I am quite new to modeller (My first time posting). I have a pdb file in > which a loop (11 residues long) is missing. I DO NOT have a template > strand which contains these missing residues. Can I use modeller to > build these for me from scratch?
Sure. This is very similar to the example in the wiki: http://salilab.org/modeller/wiki/Missing%20residues
Ben Webb, Modeller Caretaker
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modeller-care@salilab.org http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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Sajeewa Pemasinghe