Dear Sir/Madam,
I am using Modeller (Mod8V1 on OS X) to add missing residues to some pdb structures. While it worked for many structures, for some, I am getting an error (while reading the sequence (aligned) files:
openf___224_> Open seq.ali str_sn5___E> increase MAXN: 15
Can anyone please tell me what is the problem? Looks like I have to increase some parameter MAXN. What is is this parameter and where and how can I increase it?
Thanks,
Yours sincerely,
Madhurima Das Junior Research Fellow Bose Institute, Kolkata India.
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madhurima das wrote: > I am using Modeller (Mod8V1 on OS X) to add missing > residues to some pdb structures. While it worked for > many structures, for some, I am getting an error > (while reading the sequence (aligned) files: > > openf___224_> Open seq.ali > str_sn5___E> increase MAXN: 15 > > Can anyone please tell me what is the problem? Looks > like I have to increase some parameter MAXN. What is > is this parameter and where and how can I increase it?
The message is a little cryptic, but it means that you have too many colons (':') in your alignment file header. There should be only 10 colon-separated fields. See http://salilab.org/modeller/manual/node175.html
Ben Webb, Modeller Caretaker
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