hi when i corrected my alignment file as suggested, instead of getting bus error, now i`m getting segmentation fault. it seems there is still some problem with the alignment file. i would deeply appreciate if you could pin point the error. another query that i`ve is that whether the gaps in sequence of the structure make the sequece non contigous. if that is so then how to take cate of it.
thanks for any help
Manish Datt
mdatt@imtech.res.in wrote: > when i corrected my alignment file as suggested, instead of getting bus > error, now i`m getting segmentation fault. it seems there is still some > problem with the alignment file.
Your alignment is still incorrect; Modeller gives the error: rdabrk__290E> Number of residues in the alignment and pdb files are different: 468 30 Your alignment header reads structureX:1srp:101 : :130 : :srp:Abc de: 1.80: 0.22 i.e. you are telling Modeller that it corresponds to residues 101 through 130 in the PDB file, i.e. 30 residues. But your alignment has what looks like the whole sequence. Correct your alignment and everything should work.
Ben Webb, Modeller Caretaker
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mdatt＠imtech.res.in -
Modeller Caretaker