Hi,
I am trying to mutate a residue on a protein. The residue IS contained in the sequence. Hence, am a little lost about the following error:
Traceback (most recent call last): File "/Users/arjun/script/mutate_model.py", line 89, in <module> ali.append_model(mdl1, atom_files=modelname, align_codes=modelname) File "/Library/modeller-9.11/modlib/modeller/alignment.py", line 110, in append_model atom_files, align_codes) ValueError: mod_ali_412E> align code ( /Users/arjun/PDB/APOA1/mutated_models/2a01a.pdb) too long; length 47 is greater than max length 40
This is a sub structure of only the chain 'A' I saved from the original.
Regards
On 6/3/13 5:36 AM, Arjun Ray wrote: > I am trying to mutate a residue on a protein. The residue IS contained > in the sequence. Hence, am a little lost about the following error:
The mutate model script uses the full name to the input PDB file as the align code, and as the error message says, align codes are limited to 40 characters in length. The simplest solution would be to put the PDB file in the current directory and just run the script giving it '2a01a.pdb' as an argument, rather than the full path.
Ben Webb, Modeller Caretaker
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Modeller Caretaker