On 7/9/10 7:49 AM, Andrea Coletta wrote: > it is possible to retrieve the model(s) object from the > automodel.make() instance, instead of writing a pdb(s) and subsequenlty > open it with a model.read() ?

You can override the automodel.user_after_single_model() method: http://salilab.org/modeller/9v8/manual/node71.html

This method gets called after each model is produced; the model object itself is the 'self' argument. You can do your per-model analysis here.

Ben Webb, Modeller Caretaker