Re: [modeller_usage] what based we have to select structure from DBali and how ?
Respected sir
when i am practising example of advance modelling in modeller tutorial .... i got little confusion that in what based we have to select structure from DBali and how and why you choosed specifically these four structures
Doubted line:
"The structure of the Malate Dehydrogenase 1bdm has been clustered in the DBAli database within the family fm00495 of 4 members (2mdh:A, 2mdh:B. 1b8p:Aand 1dbm:A). "
On 7/17/12 12:29 PM, vmahesh@ibab.ac.in wrote: > when i am practising example of advance modelling in modeller tutorial > .... i got little confusion that in what based we have to select structure > from DBali and how and why you choosed specifically these four structures
I'm not sure why you felt this question had to be asked three times, but these structures were previously clustered together by DBAli due to their detected structural similarity. Structures that are very structurally similar to the template previously used (1bdmA) might also be suitable templates.
Ben Webb, Modeller Caretaker
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vmahesh＠ibab.ac.in