nagaraju ngaraju wrote: > I took the example given in your tutorial page: "*Modeling lactate > dehydrogenase from /Trichomonas vaginalis/ based on a single template*. > When I *run compare.pr* file I am getting the *error massage* like below > pdbnam_____E> Filename for PDB code not found: 1b8p > Directories: > Extensions : ;.atm;.pdb;.ent;.crd > (Also tried prepending 'pdb', and looking for .Z, .gz, > .bz2, .7z) > Can you please suggest me to run compare.py.

You have to download the 1b8p structure from PDB and save it into the same directory as your script. Alternatively, it is included in the archive linked at the top of the tutorial.

Ben Webb, Modeller Caretaker