Hello:
I am trying to run modeller with following scrips, but it said in terminal:
----log------------ EV/1% Traceback (most recent call last): File "model.py", line 6, in <module> j = job() File "/usr/lib64/python2.7/site-packages/modeller/parallel/job.py", line 24, in __init__ self.host = socket.gethostbyname_ex(socket.gethostname())[-1][0] socket.gaierror: [Errno -2] Name or service not known
----------scrips--------------------------------
from modeller import * from modeller.automodel import * from modeller.parallel import *
j = job()
j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave()) j.append(local_slave())
env = environ(rand_seed=-6666, restyp_lib_file='$(LIB)/restyp.lib', copy=None) log.verbose()
# Give less weight to all soft-sphere restraints: env.schedule_scale = physical.values(default=1.0, soft_sphere=0.7) env.io.atom_files_directory = ['/usr/lib/modeller9.10/bin', '/media/sf_Documents/EPFL/02-modeller/EV/1']
# Read in HETATM records from template PDBs env.io.hetatm = True
a = automodel(env, alnfile='test.ali', knowns=('MyA'), sequence='test', a.starting_model = 1 a.ending_model = 200
a.use_parallel_job(j) a.make()
On 2/18/12 1:27 AM, albert wrote: > I am trying to run modeller with following scrips, but it said in terminal: > > ----log------------ > EV/1% Traceback (most recent call last): > File "model.py", line 6, in <module> > j = job() > File "/usr/lib64/python2.7/site-packages/modeller/parallel/job.py", line > 24, in __init__ > self.host = socket.gethostbyname_ex(socket.gethostname())[-1][0] > socket.gaierror: [Errno -2] Name or service not known
Replace j = job() with j = job(host='localhost')
By default, Modeller tries to determine the hostname of your machine so that slaves on other machines can connect to it. If you don't have network connectivity, this will fail with an error like the above.
See also http://salilab.org/modeller/9.10/manual/node436.html
Ben Webb, Modeller Caretaker
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albert
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Modeller Caretaker