Hi, This is probably due to a format error in your alignment file. Please pay attention to the size of the letters in the example alignment file (upper / lower case). Another source for this problem might be that the file specified in the top script in the ALNFILE field is different than your actual alignment file name.

Good luck Iris.

On Wed, 23 Oct 2002, somanadh wrote:

> I am using modeller6v2 and ran the command > ./mod6v2 model-default.top. > The process stopped after a couple of seconds. > the model-default.log file says file not found: 'alignment.ali'. > the file exists in the same directory as model-default.top > what isthe problem? > somanadh >