Hi,

It is Python syntax error. I guess you have lost a "," after line :

knowns = '1j8fAA','1j8fBB','1j8fCC','1q1aA','1yc5A','2od7A'

moreover if you specify more then one element as an argument you should probably wrap them into a list or tuple. Lets try this line:

knowns = ('1j8fAA','1j8fBB','1j8fCC','1q1aA','1yc5A','2od7A'),

hope that helps!

regards, marcin

Tuesday 18 of December 2007 10:23:32 Urszula Uciechowska napisał(a): > Dear Modeller users, > > I am trying to use the model-loop.py script: > > Homology modeling by the automodel class > from modeller import * > from modeller.automodel import * # Load the automodel class > > log.verbose() > env = environ() > > # directories for input atom files > env.io.atom_files_directory = './:../atom_files' > > a = loopmodel(env, > alnfile = 'Sirt1-multi.ali', > # alignment filename > knowns = '1j8fAA','1j8fBB','1j8fCC','1q1aA','1yc5A','2od7A' > # codes of the templates > sequence = 'Sirt1' ) > # code of the target > a.starting_model= 1 # index of the first model > a.ending_model = 1 # index of the last model > # (determines how many models to > calculate) a.md_level = None # No refinement of model > > a.loop.starting_model = 1 # First loop model > a.loop.ending_model = 4 # Last loop model > a.loop.md_level = refine.fast # Loop model refinement level > > a.make() # do homology modeling > > but i am getting the error > > 'import site' failed; use -v for traceback > File "model-loop.py", line 14 > sequence = 'Sirt1' ) # code > of the target ^ > SyntaxError: invalid syntax > > Could someone tell me how to figure out this error? > > thank you in advance > > > > Best Regards, > Urszula Uciechowska > > MSc.PhD Student > Medicinal Chemistry Group > University of Halle-Wittenberg > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage > > :.