Dear everyone, i have a question and i need your help. i want to refine loops (50-60 and 90-100) of my model after building model by modeller9.14. however, i don't know how to set the two regions. the part codes of my script is:
return selection(self.residue_range('50:', '60:'), self.residue_range('90:', '100:'), selection_status='INITIALIZE')
is right or not? And what's the difference between self.residue_range('90:', '100:') and self.residue_range('90', '100')? thank you very much! ai yixin
On 10/9/14, 8:23 PM, Yixin Ai wrote: > i have a question and i need your help. i want to refine loops > (50-60 and 90-100) of my model after building model by modeller9.14. > however, i don't know how to set the two regions. the part codes of my > script is: > * > * > return selection(self.residue_range('50:', '60:'), > self.residue_range('90:', '100:'), > selection_status='INITIALIZE')
selection_status hasn't been used for a long long time in Modeller - maybe you're looking at a very old script. The correct syntax is simply:
return selection(self.residue_range('50:', '60:'), self.residue_range('90:', '100:'))
> And what's the difference between > self.residue_range('90:', '100:') and self.residue_range('90', > '100')?
There's no difference.
Ben Webb, Modeller Caretaker
ok ，thank you very much!
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在 2014-10-10 12:47:31，"Modeller Caretaker" modeller-care@salilab.org 写道： >On 10/9/14, 8:23 PM, Yixin Ai wrote: >> i have a question and i need your help. i want to refine loops >> (50-60 and 90-100) of my model after building model by modeller9.14. >> however, i don't know how to set the two regions. the part codes of my >> script is: >> * >> * >> return selection(self.residue_range('50:', '60:'), >> self.residue_range('90:', '100:'), >> selection_status='INITIALIZE') > >selection_status hasn't been used for a long long time in Modeller - >maybe you're looking at a very old script. The correct syntax is simply: > > return selection(self.residue_range('50:', '60:'), > self.residue_range('90:', '100:')) > >> And what's the difference between >> self.residue_range('90:', '100:') and self.residue_range('90', >> '100')? > >There's no difference. > > Ben Webb, Modeller Caretaker >-- >modeller-care@salilab.org http://www.salilab.org/modeller/ >Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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