On 4/12/11 7:27 AM, Benjamin SCHWARZ wrote: > If I understand well, the salign.iterative_structural_align() > function is an exact implementation of the algorithm presented in > [Madhusudhan2009]. Is there a python script version of this function > ? Something that could be tweaked and modified...

Of course - all the Modeller scripts are Python scripts, so you can modify them to your heart's content. Look at modlib/modeller/salign.py.

Ben Webb, Modeller Caretaker