서주현 wrote: > Let's say that I have 10 models which are generated by MODELLER 8.1. > Is there any assessment score in the result files? > If there is, which module does MODELLER use to assess the final model?

You can request model assessment using the 'assess_methods' argument to automodel. See http://salilab.org/modeller/manual/node26.html for an example and http://salilab.org/modeller/manual/node36.html for full documentation.

Two methods are available by default - assess.GA341 and assess.DOPE - but these are just ordinary Python functions, so you can define your own function to generate an assessment score if you so desire (for example, you could call an external program like Prosa and return the score).

Ben Webb, Modeller Caretaker