help required in preparing .ali file
Dear Sir/Madam
In my case there are to starting residue positions first residues start from 2nd position and continuous upto 39th position than from 40 to 45th positions residues are missing, thn from 46th onwards residues are present
now while preparing ali file i am confused how to mention the 2 starting positions of residues?
kindly tell me how can i specify residues from 2nd upto 39th position and than from 46th till end ?
Sincerely
Sumra Abbasi
On 7/14/12 11:06 PM, Sumra Wajid Abbasi 30-FBAS/MSBI/F09 wrote: > In my case there are to starting residue positions first residues start > from 2nd position and continuous upto 39th position than from 40 to 45th > positions residues are missing, thn from 46th onwards residues are present > > now while preparing ali file i am confused how to mention the 2 starting > positions of residues?
If there are missing residues in your template, you need do nothing special about the gap between 40 and 45. Modeller only cares about the starting residue and the ending residue.
Ben Webb, Modeller Caretaker
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Modeller Caretaker -
Sumra Wajid Abbasi 30-FBAS/MSBI/F09