Hi,

It looks like you : 1. didn't installed MODELLER correctly 2. didn't source .cshrc after installation

Please, email me a copy of your .cshrc and all input files.

Thanks, Bozidar

PS. I implore everybody to email all the questions to the modeller_usage list first, because some other people might have the same problems and they could help or learn how to solve similar problems when they encounter them ;-)

On Sat, 27 Apr 2002, [ISO-2022-JP] $BLpLn!!2mM5(J wrote:

> I have vety basic questions about modeller6v0. > I have installed it in my PC(Linux RedHat 7). > > I tried to run modeller according to manual(Tutorial on using MODELLER for > comparative modeling). > I can make sure Atom file,Alignment file, Script file and so on. > > There is a sample script file model-default.top as follows > (examples/tutorial-model/model-default.top). > > # Homology modelling by the MODELLER TOP routine 'model'. > > INCLUDE # Include the > predefined TOP routines > > SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file > SET ALNFILE = 'alignment.ali' # alignment filename > SET KNOWNS = '5fd1' # codes of the templates > SET SEQUENCE = '1fdx' # code of the target > SET ATOM_FILES_DIRECTORY = './:../atom_files' # directories for input atom > files > SET STARTING_MODEL= 1 # index of the first model > SET ENDING_MODEL = 1 # index of the last model > # (determines how > many models to calculate) > > CALL ROUTINE = 'model' # do homology modelling > > > > According to manual > > "To run MODELLER with the script file model-default.top, execute the > following command: > > mod model-default" > > So I tried to input mod model-default as follows. > > [root@fox08.tutorial-model] # mod model-default > > But,the answer is no directory. > > I can't run modeller .I tried other command too. > > Maybe, I don't understand very basci method. > > What should I do to run modeller? > >