Hi,
I have two questions/problems:
1. I need some help refining part of a model using another structure as reference. I tried the 'model-segment.py' script (https://salilab.org/modeller/manual/node23.html), but I'm unable to add the second structure (.pdb) to be used as the reference for the atoms that will be refined. 2. Is there a way to generate a model using only parts of two different structures? Like some residues from 'model1', and some from 'model2'. They are highly different sequences, so I tried modelling with multiple templates and got bad results.
Thanks in advance.
On 7/1/21 3:18 PM, Rafael Lemos wrote: > 1. I need some help refining part of a model using another structure as > reference.
To do this, you would simply do normal comparative modeling using the "other structure" as a template.
> 2. Is there a way to generate a model using only parts of two different > structures? Like some residues from 'model1', and some from 'model2'.
Sure, see https://salilab.org/modeller/FAQ.html#1
Ben Webb, Modeller Caretaker
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Modeller Caretaker -
Rafael Lemos