I am looking for tools that would allow me to cluster a set of superposed structures such as those obtained for instance through an iterative salign run. Does MODELLER provide anything to perform (structures) clustering ?
On 10/24/11 9:50 AM, Benjamin SCHWARZ wrote: > I am looking for tools that would allow me to cluster a set of > superposed structures
Check out transfer_xyz, which does basic clustering: http://salilab.org/modeller/9.10/manual/node182.html
Ben Webb, Modeller Caretaker
Thanks for the answer Ben,
Unless I miss totally the point, the transfer_xyz function allows one to agglomerate a set of models to produce an average structure. I am more interested in the other type of clustering evoked by Min-yi Shen, namely : define subset of similar structures. Can you tell me if there is anything to do that in MODELLER ? If that is not the case, I'll resort to a trick as the one suggested by Min-yi Shen.
--Thanks
>> I am looking for tools that would allow me to cluster a set of >> superposed structures > > Check out transfer_xyz, which does basic clustering: > http://salilab.org/modeller/9.10/manual/node182.html
On 11/8/11 7:17 AM, Benjamin SCHWARZ wrote: > Unless I miss totally the point, the transfer_xyz function allows one > to agglomerate a set of models to produce an average structure. I am > more interested in the other type of clustering evoked by Min-yi > Shen, namely : define subset of similar structures. Can you tell me > if there is anything to do that in MODELLER ?
No, the only clustering method in Modeller is transfer_xyz.
Ben Webb, Modeller Caretaker
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Benjamin SCHWARZ -
Modeller Caretaker