Good Day!!!!!!!!!

I have a doubt, that modeller searches the best templates with respect to our target sequence in the sequence database using the command

$mod8v2 buildtarget.py

Now i make my comparetarget.py by adding the best five template's PDB i.d's as i got from buildtarget.log

$mod8v2 comparetarget.py

i get these errors!!!!!!!!!!!!

============================================================================= Traceback (most recent call last): File "compare target.py", line 7, in ? aln.malign3d() File "/usr/lib/modeller8v2/modlib/modeller/alignment.py", line 210, in malign3d io=io.modpt, libs=libs.modpt, **vars) File "/usr/lib/modeller8v2/modlib/modeller/util/top.py", line 93, in malign3d return _modeller.malign3d(aln, io, libs, *args) _modeller.error: malign3_682E> Structural information is not available for all sequences in the alignment. Aborting. ============================================================================

I am surprised to see the error -structural information is not available. It means the PDB i'ds are missing in the sequence database?. But those PDB id.s are taken from my buildtarget.log. How can i execute compare target.log?

Now I have downloaded the necessary PDB files manually, Could you tell which/where directory to paste these files with a detailed command list since i am beginner to modeller.

With Regards Robert Selwyne.