Hello all,

i also tried to run my skript to create a multiple alignment.

top-file: READ_MODEL FILE = '1HYZ.pdb', MODEL_SEGMENT 'FIRST:A''LAST:A' SEQUENCE_TO_ALI ALIGN_CODES = '1HYZ'

READ_MODEL FILE = '1BIS.pdb', MODEL_SEGMENT 'FIRST:B''LAST:B' SEQUENCE_TO_ALI ALIGN_CODES = '1BIS',ADD_SEQUENCE = on

READ_MODEL FILE = '1BIU.pdb', MODEL_SEGMENT 'FIRST:B''LAST:B' SEQUENCE_TO_ALI ALIGN_CODES = '1BIU',ADD_SEQUENCE = on

SET ATOM_FILES = '1HYZ' '1BIS' '1BIU' MALIGN3D

SET ADD_SEQUENCE = on, ALIGN_BLOCK = NUMB_OF_SEQUENCES READ_ALIGNMENT FILE = 'target.ali', ALIGN_CODES = ALIGN_CODES 'target', ADD_SEQUENCE = on

ALIGN2D

WRITE_ALIGNMENT FILE='target.ali', ALIGNMENT_FORMAT = 'PIR' WRITE_ALIGNMENT FILE='target.pap', ALIGNMENT_FORMAT = 'PAP'

But my job don't terminate.... it always made the same log file

log-file: Job starting time (YY/MM/DD HH:MM:SS): 2005/01/13 14:15:56.678

rdactio_534E> Command not recognized: recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1

Dynamically allocated memory at finish [B,kB,MB]: 56755 55.425 0.054 Starting time : 2005/01/14 14:15:56.678 Closing time : 2005/01/14 14:15:57.612 Total CPU time [seconds] : 0.90

Please can anybody help me....