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----- Forwarded message from sujata sujataroy@hotmail.com -----

From: "sujata" sujataroy@hotmail.com To: modeller-care@salilab.org Subject: modelling problem Date: Fri, 5 Sep 2003 09:56:35 +0530 X-Mailer: Microsoft Outlook Express 6.00.2600.0000

I want to model a protein using only one template,because i have obtained significant sequence similarity with our query sequence. But i am having a different question. In the template there are three residues between two cosicutive structurally conserved region, where in the query sequence the gaps are inserted due to proper alignment. I am assigning coordinates to the structurally conserved region, thus there is a gap in my model protein. how can i solve this problem? can any one help me?

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