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----- Forwarded message from Darren Thompson thompson@hydrogen.ucsc.edu -----

Date: Wed, 10 Sep 2003 13:37:34 -0700 Subject: Re: how to ERROR: MODEL atom not classified: TYR:OT1 TYR From: Darren Thompson thompson@hydrogen.ucsc.edu To: Modeller Caretaker modeller-care@salilab.org X-Mailer: Apple Mail (2.552)

does your template have dihydroxytyrosine, OT is not the standard pdb nomenclature for oxygen atoms. Maybe OT is oxygen terminal? Try editing the pdb file and remove the T On Wednesday, September 10, 2003, at 10:38 AM, Modeller Caretaker wrote:

>Forwarding to list. > >----- Forwarded message from Sherin Yang sherin@sina.com ----- > >From: "Sherin Yang" sherin@sina.com >To: modeller-care@salilab.org >Subject: how to ERROR: MODEL atom not classified: TYR:OT1 TYR >Date: Wed, 10 Sep 2003 10:54:04 +0800 >X-Mailer: Microsoft Outlook Express 6.00.2800.1106 > >Hi, all > >I want to use Align2D to align a sequence with a structure with pdb >format. I can't get the proper result. The log file tell me the >following wrong: > >iatmcls_286W> MODEL atom not classified: TYR:OT1 TYR >iatmcls_286W> MODEL atom not classified: TYR:OT2 TYR > >Who can tell me how to resolve such problem? > >Thank you! > >Sherin Yang > > >----- End forwarded message ----- > >

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