Dear Dr. Sameer Hassan
I would like to ask additional questions. The question is about Error mess age during Modeller performing. The error message is as below
##########ERROR MESSAGES.##########
pair2___223E> Array too small. Increase MPAIRS current maximum, current need: 20454 20454 recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 16848845 16 453.950 16.068
##########ERROR MESSAGES.##########
Could you please let me know the meaning of the error message and the way o f this trouble shooting. I am very glad if you kindly and immediately treat this matter. Thank you and regards,
Shunsaku Takeishi Osaka University xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 武石俊作（Shunsaku Takeishi） 大阪大学大学院理学研究科 生物科学専攻 生物物質学大講座 生体分子機能学グループ (倉光研究室) shunt@bio.sci.osaka-u.ac.jp xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
On Sun, Nov 16, 2003 at 07:32:29PM +0900, Shunsaku Takeishi wrote: > I would like to ask additional questions. The question is about Error > message during Modeller performing. The error message is as below > > ##########ERROR MESSAGES.########## > > pair2___223E> Array too small. Increase MPAIRS > current maximum, current need: 20454 20454 > recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
This error message is seen when Modeller guesses how many atom pairs to use, and gets it wrong. If you are using a version of Modeller older than 6v2, or 6v2 downloaded before July 2002, then please try again with the most recent 6v2. If you have modified the van der Waals radii of your atoms to non-physical values, this can cause problems (Modeller assumes that the average vdw radius is roughly 1.5A when performing this calculation). If this is your problem, you can work around it by using larger vdw radii, if necessary scaling other distances appropriately. If not, please send the input files that reproduce this problem, so that it can be fixed.
Ben Webb, Modeller Caretaker
participants (2)
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Modeller Caretaker -
Shunsaku Takeishi