log file: #######################################

MODELLER 6v1, 17 Jan 2002

PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS

Copyright(c) 1989-2002 Andrej Sali All Rights Reserved

Written by A. Sali with help from A. Fiser, R. Sanchez, M.A. Marti-Renom, B. Jerkovic, A. Badretdinov, F. Melo, J.P. Overington & E. Feyfant Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK

Kind, OS, HostName, Kernel, Processor: 4, Linux master.cl.mssm.edu 2.4.9-13smp i686 Date and time of compilation : 01/24/2002 16:28:15 Job starting time (YY/MM/DD HH:MM:SS): 2002/05/02 11:04:08.230

getprog_531W> ROUTINE redefined: getnames

check_ali___> Checking the sequence-structure alignment.

Implied target CA(i)-CA(i+1) distances longer than 8.0 angstroms:

ALN_POS TMPL RID1 RID2 NAM1 NAM2 DIST ---------------------------------------------- END OF TABLE

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Top file: ********************************* INCLUDE SET ATOM_FILES_DIRECTORY = './' SET ALNFILE = '1gh0B-3-1eyxK.ali' SET KNOWNS = '1eyxK' SET SEQUENCE = '1gh0B' SET STARTING_MODEL = 1 SET ENDING_MODEL = 5 CALL ROUTINE = 'model' SUBROUTINE ROUTINE = 'getnames' STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATION = 'EQ', THEN = ; 'STRING_OPERATE OPERATION = CONCATENATE, STRING_ARGUMENTS = 1gh0B-3-1eyxK .ini, RESULT = MODEL' STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERATION = 'EQ', THEN = ; 'STRING_OPERATE OPERATION = CONCATENATE, STRING_ARGUMENTS = 1gh0B-3-1eyxK .rsr, RESULT = CSRFILE' STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = '1gh0B-3-1eyxK' '.sch', RESULT = SCHFILE STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = '1gh0B-3-1eyxK' '.mat', RESULT = MATRIX_FILE SET ROOT_NAME = '1gh0B-3-1eyxK' RETURN END_SUBROUTINE *************************************

>P1;1gh0B structureX:1gh0B: 1 :B: 172 :B:undefined:undefined:-1.00:-1.00 MFDAFTKVVSQADTRGEMLSTAQIDALSQMVAESNKRLDVVNRITSNASTIVSNAARSLFAEQPQLIAPGG-AYT SRRMAACLRDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGSSVAVGVGKMKEAALA---IVNDPAG ITPGDCSALASEIAGYFDRAAAAVS* >P1;1eyxK structureX:1eyxK: 1 : : 164 : :undefined:undefined:-1.00:-1.00 MKSVITTVISAADSAGRFPSSSDLESVQGNIQRASARLEAAEKLASNHEAVVKEAGDACFGKYGYLKNPGEAGEN QEKINKCYRDIDHYMRLVNYSLVIGGTGPLDEWGIAGAREVYRTLNLPTSAYIAAFAFTRDR-LCGPRDMS---- -----AQ-AGVEYSTALDYIINSLS*