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From: Moshe Amitay amitaym@mail.biu.ac.il Organization: BIU X-Mailer: Mozilla 4.79 [en] (X11; U; IRIX64 6.5 IP35) X-Accept-Language: en MIME-Version: 1.0 To: modeller_usage@salilab.org Subject: loop modeling Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit

Hi all, I whuld like your advice: I build a model of a membrane protein and I want now to do "loop modeling" to few extra cellular and intra-cellular loops. I wonder if this protocol of modeller is the right choice since the model doesn't contain the membrane and I actually ignore the influence of the polar heads. thank's Moshe Amity.

-------------------------------------- Moshe Amity amitaym@mail.biu.ac.il Dep. of Chemistry Bar Ilan University Israel.

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