build_profile problem
Hi everyone,
I have a problem with build_profile.py. It runs fine but the output file only appear one line about my target sequence. It doesn´t appear about the molecules from my database (seqdump.pir). There is an warning in the midlle of the process that say this:
regress_656W> Number of bins for histogram too small - results maybe unreliable, nbins: 4 regress_656W> Number of bins for histogram too small - results maybe unreliable, nbins: 4 regress_656W> Number of bins for histogram too small - results maybe unreliable, nbins: 4
Anyone can help me?
Thanks.
In attachment, my files.
On 9/30/14, 7:53 AM, Vinicius Seus wrote: > I have a problem with build_profile.py. It runs fine but the output file > only appear one line about my target sequence. It doesn´t appear about > the molecules from my database (seqdump.pir). There is an warning in the > midlle of the process that say this: > > regress_656W> Number of bins for histogram too small - results maybe > unreliable, nbins: 4 > regress_656W> Number of bins for histogram too small - results maybe > unreliable, nbins: 4 > regress_656W> Number of bins for histogram too small - results maybe > unreliable, nbins: 4
Your database is too small, so it can't calculate e-values. Normally build_profile is used to scan against a large database (PDB or UniProt).
Ben Webb, Modeller Caretaker
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Modeller Caretaker -
Vinicius Seus