I have a 980 amino acid protein whose structure is unknown. I wish to learn if this protein belongs to a known family of protein of similar structure.
I am not sure how to go about searching the modeler database to see if at least part of the sequence is similar to another sequence.
Your help would be appreciated.
S. Manolatos
On Sun, 1 Feb 2004 12:30:58 -0500 "Spero Manolatos" sperom@verizon.net wrote:
> I have a 980 amino acid protein whose structure is unknown. I wish to > learn if this protein belongs to a known family of protein of > similar structure. > > I am not sure how to go about searching the modeler database to see if > at least part of the sequence is similar to another sequence.
I suggest you search the protein sequence databases available at these sites :
http://www.ebi.ac.uk/interpro/index.html http://pfam.wustl.edu/ http://www.ncbi.nlm.nih.gov/BLAST/
hope it helps.
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Spero Manolatos