I am getting this error when I run model-single.py
I am using windows 7 OS, modeller9.10, python3
The other commands (build_profile, align2d, compare) run successfully ..
C:\Program Files\Modeller9.10\bin\akt3>mod9.10 model-single.py
'import site' failed; use -v for traceback
Traceback (most recent call last):
File "model-single.py", line 9, in ?
a.make()
File "C:\Program Files\Modeller9.10\modlib\modeller\automodel\automodel.py", l
ine 96, in make
self.homcsr(exit_stage)
File "C:\Program Files\Modeller9.10\modlib\modeller\automodel\automodel.py", l
ine 408, in homcsr
aln = self.read_alignment()
File "C:\Program Files\Modeller9.10\modlib\modeller\automodel\automodel.py", l
ine 398, in read_alignment
aln.append(file=self.alnfile, align_codes=self.knowns+[self.sequence])
File "C:\Program Files\Modeller9.10\modlib\modeller\alignment.py", line 78, in
append
allow_alternates)
_modeller.ModellerError: read_al_373E> Protein specified in ALIGN_CODES(i) was n
ot found in the alignment file; ALIGN_CODES( 1) = 3O96
On 1/29/12 12:23 PM, Naresh wrote: > I am getting this error when I run model-single.py ... > _modeller.ModellerError: read_al_373E> Protein specified in > ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = > 3O96
Either you don't have a sequence called '3O96' in your alignment file, or your alignment file isn't in the correct format.
Ben Webb, Modeller Caretaker